Scientists restore hearing in noise-deafened mice

By the University of Michigan Health System

Scientists have restored the hearing of mice partly deafened by noise, using advanced tools to boost the production of a key protein in their ears.

This microscope image of tissue from deep inside a normal mouse ear shows how ribbon synapses (red) form the connections between the hair cells of the inner ear (blue) and the tips of nerve cells (green) that connect to the brain.

Credit: Corfas lab - University of Michigan

By demonstrating the importance of the protein, called NT3, in maintaining communication between the ears and brain, these new findings pave the way for research in humans that could improve treatment of hearing loss caused by noise exposure and normal aging.

In a new paper in the online journal eLife, the team from the University of Michigan Medical School's Kresge Hearing Research Institute and Harvard University report the results of their work to understand NT3's role in the inner ear, and the impact of increased NT3 production on hearing after a noise exposure.

Their work also illustrates the key role of cells that have traditionally been seen as the "supporting actors" of the ear-brain connection. Called supporting cells, they form a physical base for the hearing system's "stars": the hair cells in the ear that interact directly with the nerves that carry sound signals to the brain. This new research identifies the critical role of these supporting cells along with the NT3 molecules that they produce.

NT3 is crucial to the body's ability to form and maintain connections between hair cells and nerve cells, the researchers demonstrate. This special type of connection, called a ribbon synapse, allows extra-rapid communication of signals that travel back and forth across tiny gaps between the two types of cells.

"It has become apparent that hearing loss due to damaged ribbon synapses is a very common and challenging problem, whether it's due to noise or normal aging," says Gabriel Corfas, Ph.D., who led the team and directs the U-M institute. "We began this work 15 years ago to answer very basic questions about the inner ear, and now we have been able to restore hearing after partial deafening with noise, a common problem for people. It's very exciting."

Using a special genetic technique, the researchers made it possible for some mice to produce additional NT3 in cells of specific areas of the inner ear after they were exposed to noise loud enough to reduce hearing. Mice with extra NT3 regained their ability to hear much better than the control mice.

Now, says Corfas, his team will explore the role of NT3 in human ears, and seek drugs that might boost NT3 action or production. While the use of such drugs in humans could be several years away, the new discovery gives them a specific target to pursue.

Corfas, a professor and associate chair in the U-M Department of Otolaryngology, worked on the research with first author Guoqiang Wan, Ph.D., Maria E. Gómez-Casati, Ph.D., and others in his former institution, Harvard. Some of the authors now work with Corfas in his new U-M lab. They set out to find out how ribbon synapses -- which are found only in the ear and eye -- form, and what molecules are important to their formation and maintenance.

Anyone who has experienced problems making out the voice of the person next to them in a crowded room has felt the effects of reduced ribbon synapses. So has anyone who has experienced temporary reduction in hearing after going to a loud concert. The damage caused by noise -- over a lifetime or just one evening -- reduces the ability of hair cells to talk to the brain via ribbon synapse connections with nerve cells.

Targeted genetics made discovery possible

After determining that inner ear supporting cells supply NT3, the team turned to a technique called conditional gene recombination to see what would happen if they boosted NT3 production by the supporting cells. The approach allows scientists to activate genes in specific cells, by giving a dose of a drug that triggers the cell to "read" extra copies of a gene that had been inserted into them. For this research, the scientists activated the extra NT3 genes only into the inner ear's supporting cells.

The genes didn't turn on until the scientists wanted them to -- either before or after they exposed the mice to loud noises. The scientists turned on the NT3 genes by giving a dose of the drug tamoxifen, which triggered the supporting cells to make more of the protein. Before and after this step, they tested the mice's hearing using an approach called auditory brainstem response or ABR -- the same test used on humans.

The result: the mice with extra NT3 regained their hearing over a period of two weeks, and were able to hear much better than mice without the extra NT3 production. The scientists also did the same with another nerve cell growth factor, or neurotrophin, called BDNF, but did not see the same effect on hearing.

Next steps

Now that NT3's role in making and maintaining ribbon synapses has become clear, Corfas says the next challenge is to study it in human ears, and to look for drugs that can work like NT3 does. Corfas has some drug candidates in mind, and hopes to partner with industry to look for others.

Boosting NT3 production through gene therapy in humans could also be an option, he says, but a drug-based approach would be simpler and could be administered as long as it takes to restore hearing.

Corfas notes that the mice in the study were not completely deafened, so it's not yet known if boosting NT3 activity could restore hearing that has been entirely lost. He also notes that the research may have implications for other diseases in which nerve cell connections are lost -- called neurodegenerative diseases. "This brings supporting cells into the spotlight, and starts to show how much they contribute to plasticity, development and maintenance of neural connections," he says.

In addition to Corfas, Wan and Gómez-Casati, who now works in Argentina, the research was performed by Angelica R. Gigliello, and M. Charles Liberman, Ph.D. director of the Eaton-Peabody Laboratories of the Massachusetts Eye and Ear Infirmary. The research was supported by the National Institute on Deafness and Other Communication Disorders (DC004820, DC005209) and by the Eunice Kennedy Shriver National Institute of Child Health and Human Development (HD18655), both part of the National Institutes of Health, and by the Hearing Health Foundation.

The above post is reprinted from materials provided by University of Michigan Health System. 

  We need your help in funding the exciting work of hearing and balance scientists. 

To donate today to Hearing Health Foundation and support groundbreaking research, visit hhf.org/name-a-grant.

Meet the Researcher: Noah R. Druckenbrod, Ph.D.

MEET THE RESEARCHER

NAME:

Noah R. Druckenbrod, Ph.D.
Harvard University

BIO:

Druckenbrod received a Ph.D. in Cellular Biology and Neurobiology at the University of Wisconsin, Madison, and is now a postdoctoral fellow in the department of neurobiology at Harvard Medical School, Boston. A 2015 Emerging Research Grant scientist, he is the recipient of The Todd M. Bader Research Grant of The Barbara Epstein Foundation, Inc.

IN HIS WORDS:

The mature cochlea is a spiraled hollow chamber of bone, nestled next to the brain, that contains all the necessary components to transmit sound information to the brain.

This feat is accomplished through the organization of inner ear hair cells and spiral ganglion neurons (SGNs). Nerve cell fibers (axons) must transmit electrochemical information from the hair cells through precise synaptic connections whose arrangement is established in the fetus.

Surrounding almost all nerves are glial cells that are classically thought to support neuron health. Our early data and evidence from other studies lead us to hypothesize that how nerve cells interact with the glial tissue plays a major role in how signals guide nerve fibers through the three-dimensional terrain of the cochlea.

For example, glial cells and neurons not only attract one another but they also send signals back and forth to instruct one another’s cellular properties and behaviors. I am focusing on a glial cell type called Schwann cells.

Aspects of this research relate to cancer—and, relatedly, tinnitus. Schwann cell tumors, called schwannomas, are among the most common nervous system tumors in humans, and the most common tumors in the skull are schwannomas of the inner ear. As these tumors grow they compress vestibular and auditory nerves, usually causing hearing loss, tinnitus, and dizziness.

A fascinating property of Schwann cells is that they will begin to divide if they are not in contact with neurons. And a hallmark of inner ear schwannomas is that they appear to fail to interact with SGN axons. Therefore, the fetal cochlea offers a unique opportunity to better understand how auditory circuitry develops as well as how it can be disrupted by disease.

The thrill of discovery and figuring out the unknown has always inspired me. After some time enjoying all the sciences I became most interested in biology and health.

The first experiment of mine I can remember was in third grade for a science fair. At the time I was very interested in optical illusions and thought that left- and right-handed people may report seeing different images in a specific type of illusion. In this case I discovered that experiments don’t always work as planned! The results of the experiment were unclear because I couldn’t find enough left-handed people in my school.

You may have heard of “Ancient Aliens,” a funny show on the History Channel. About three years ago, as a favor to one of the producers I’d met, I appeared on a couple of episodes. It was a fun experience—but I was sure to make no scientifically dubious statements, unlike some of their other experts!

A 2015 Emerging Research Grant scientist, Noah R. Druckenbrod, Ph.D., grant was generously funded by The Barbara Epstein Foundation, Inc. To join Hearing Health Foundation in funding the innovative, groundbreaking work of emerging hearing and balance researchers, please see hhf.org/name-a-grant.

Unlocking the Potential for Hair Cell Regeneration

By Laura Friedman

On November 5, 2015, Hearing Health Foundation hosted its second live-video research briefing as part of our effort to provide regular updates on our research programs and progress. Through these briefings, our goal is for our attendees to obtain new information and understanding about hearing loss, prevention and research toward a cure.

Dr. Andy Groves, Hearing Restoration Project consortium member, presented recent research advances and new discoveries, the use of new technology, and our future plans to prevent and cure hearing loss and tinnitus. The HRP was founded in 2011 and is the first and only international research consortium focused on investigating hair cell regeneration as a cure for hearing loss and tinnitus. The overarching principle of the consortium is collaboration: open sharing of data and ideas. The HRP consortium consists of 13 of the top investigators in the audiological space, as well as a scientific director, Dr. Barr-Gillespie.

We wanted to share with you highlights from the presentation, which is available to watch with live captioning or to read with notes summarizing each slide.

Your Support Is Needed!

Hair cell regeneration is a plausible goal for eventual treatment of hearing and balance disorders. 

The question is not if we will regenerate hair cells in humans, but when.  

However, we need your support to continue this vital research and find a cure! Please make your gift today. 

Selective Attention or Selective Hearing?

By Ross K Maddox, Huriye Atilgan, Jennifer K Bizley, Adrian KC Lee

In the noisy din of a cocktail party, there are many sources of sound that compete for our attention. Even so, we can easily block out the noise and focus on a conversation, especially when we are talking to someone in front of us.

This is possible in part because our sensory system combines inputs from our senses. Scientists have proposed that our perception is stronger when we can hear and see something at the same time, as opposed to just being able to hear it. For example, if we tried to talk to someone on a phone during a cocktail party, the background noise would probably drown out the conversation. However, when we can see the person we are talking to, it is easier to hold a conversation.

Maddox et al. have now explored this phenomenon in experiments that involved human subjects listening to an audio stream that was masked by background sound. While listening, the subjects also watched completely irrelevant videos that moved in sync with either the audio stream or with the background sound. The subjects then had to perform a task that involved pushing a button when they heard random changes (such as subtle changes in tone or pitch) in the audio stream.

The experiment showed that the subjects performed well when they saw a video that was in sync with the audio stream. However, their performance dropped when the video was in sync with the background sound. This suggests that when we hold a conversation during a noisy cocktail party, seeing the other person's face move as they talk creates a combined audio–visual impression of that person, helping us separate what they are saying from all the noise in the background. However, if we turn to look at other guests, we become distracted and the conversation may become lost.

This post originally appeared on eLife Science on Feb 5, 2015 in reference to the scienctific publication, "Auditory selective attention is enhanced by a task-irrelevant temporally coherent visual stimulus in human listeners." HHF amended the title from the original publication, permitted through Creative Commons. 

We need your help in funding the exciting work of hearing and balance scientists. 

To donate today to Hearing Health Foundation and support groundbreaking research, visit hhf.org/name-a-grant.

How Noise Affects the Palate

By Melissa Osgood, Cornell University

If you're planning to fly over the holiday, plan to drink some tomato juice. While examining how airplane noise affects the palate, Cornell University food scientists found sweetness suppressed and a tasty, tender tomato surprise: umami.

A Japanese scientific term, umami describes the sweet, savory taste of amino acids such as glutamate in foods like tomato juice, and according to the new study, in noisy situations -- like the 85 decibels aboard a jetliner -- umami-rich foods become your taste bud's best buds.

"Our study confirmed that in an environment of loud noise, our sense of taste is compromised. Interestingly, this was specific to sweet and umami tastes, with sweet taste inhibited and umami taste significantly enhanced," said Robin Dando, assistant professor of food science. "The multisensory properties of the environment where we consume our food can alter our perception of the foods we eat."

With Dando, Kimberly Yan, co-authored the study, "A Crossmodal Role for Audition in Taste Perception," published online in March in the Journal of Experimental Psychology: Human Perception and Performance. The research will appear in a forthcoming print edition of the journal.

The study may guide reconfiguration of airline food menus to make airline food taste better. Auditory conditions in air travel actually may enhance umami, the researchers found. In contrast, exposure to the loud noise condition dulled sweet taste ratings.

Airlines acknowledge the phenomenon. German airline Lufthansa had noticed that passengers were consuming as much tomato juice as beer. The airline commissioned a private study released last fall that showed cabin pressure enhanced tomato juice taste.

Taste perception depends not only on the integration of several sensory inputs associated with the food or drink itself, but also on the sensory attributes of the environment in which the food is consumed, the scientists say.

"The multisensory nature of what we consider 'flavor' is undoubtedly underpinned by complex central and peripheral interactions," said Dando. "Our results characterize a novel sensory interaction, with intriguing implications for the effect of the environment in which we consume food."

The above post is reprinted from materials provided by Cornell University.

Best Supporting Actors - In Your Ears?

By the University of Michigan Health System

This microscopic view of cells deep within the ear of a newborn mouse show in red and blue the supporting cells that surround the hair cells (green) that send sound signals to the brain. New research shows that the supporting cells can regenerate if damaged in the first days of life, allowing hearing to develop normally. This gives new clues for potential ways to restore hearing.

Credit: Guoqiang Wan, Univ. of Michigan

There’s a cast of characters deep inside your ears -- many kinds of tiny cells working together to allow you to hear. The lead actors, called hair cells, play the crucial role in carrying sound signals to the brain.

But new research shows that when it comes to restoring lost hearing ability, the spotlight may fall on some of the ear’s supporting actors – and their understudies.

In a new paper published online first by the Proceedings of the National Academy of Sciences, researchers from the University of Michigan Medical School, St. Jude Children’s Research Hospital and colleagues report the results of in-depth studies of these cells, fittingly called supporting cells.  

The research shows that damage to the supporting cells in the mature mouse results in the loss of hair cells and profound deafness. But the big surprise of this study was that if supporting cells are lost in the newborn mouse, the ear rapidly regenerates new supporting cells – resulting in complete preservation of hearing. This remarkable regeneration resulted from cells from an adjacent structure moving in and transforming into full-fledged supporting cells. 

It was as if a supporting actor couldn’t perform, and his young understudy stepped in suddenly to carry on the performance and support the lead actor -- with award-winning results.

The finding not only shows that deafness can result from loss of supporting cells -- it reveals a previously unknown ability to regenerate supporting cells that’s present only for a few days after birth in the mice.

If scientists can determine what’s going on inside these cells, they might be able to harness it to find new approaches to regenerating auditory cells and restoring hearing in humans of all ages.

Senior author and U-M Kresge Hearing Research Institute director Gabriel Corfas, Ph.D., says the research shows that supporting cells play a more critical role in hearing than they get credit for.

In fact, he says, efforts to restore hearing by making new hair cells out of supporting cells may fail, unless researchers also work to replace the supporting cells. “We had known that losing hair cells results in deafness, and there has been an effort to find a way to regenerated these specialized cells. One idea has been to induce supporting cells to become hair cells. Now we discover that losing supporting cells kills hair cells as well,” he explains.

“And now, we’ve found that there’s an intrinsic regenerative potential in the very early days of life that we could harness as we work to cure deafness,” continues Corfas, who is a professor in the U-M Department of Otolaryngology. “This is relevant to many forms of inherited and congenital deafness, and hearing loss due to age and noise exposure. If we can identify the molecules that are responsible for this regeneration, we may be able to turn back the clock inside these ears and regenerate lost cells.”

In the study, the “understudy” supporting cells found in a structure called the greater epithelial ridge transformed into full-fledged supporting cells after the researchers destroyed the mice’s own supporting cells with a precisely targeted toxin that didn’t affect hair cells. The new cells differentiated into the kinds that had been lost, called inner border cells and inner phalangeal cells.

“Hair cell loss can be a consequence of supporting cell dysfunctional or loss, suggesting that in many cases deafness could be primarily a supporting cell disease,” says Corfas. “Understanding the mechanisms that underlie these processes should help in the development of regenerative medicine strategies to treat deafness and vestibular disorders.”

Making sure that the inner ear has enough supporting cells, which themselves can transform into hair cells, will be a critical upstream step of any regenerative medicine approaches, he says.

Corfas and his colleagues continue to study the phenomenon, and hope to find drugs that can trigger the same regenerative powers that they saw in the newborn mice.

The research was a partnership between Corfas’ team at U-M and that of Jian Zuo, Ph.D., of St. Jude, and the two share senior authorship. Marcia M. Mellado Lagarde, Ph.D. of St. Jude and Guoqiang Wan, Ph.D., of U-M are co-first authors. Additional authors are LingLi Zhang of St. Jude, Corfas’ former colleagues at Harvard University Angelica R. Gigliello and John J. McInnis; and Yingxin Zhang and Dwight Bergles, both of Johns Hopkins University.

The research was funded by a Sir Henry Wellcome Fellowship, a Hearing Health Foundation Emerging Research Grant, the Boston Children’s Hospital Otolaryngology Foundation, National Institutes of Health grants DC004820, HD18655, DC006471, and CA21765; Office of Naval Research Grants N000140911014, N000141210191, and N000141210775, and by the American Lebanese Syrian Associated Charities of St. Jude Children’s Research Hospital.

The above post is reprinted from materials provided by University of Michigan Health System. 

  We need your help in funding the exciting work of hearing and balance scientists. 

To donate today to Hearing Health Foundation and support groundbreaking research, visit hhf.org/name-a-grant.

Hearing: It Takes Two

By Teresa Nicolson

A major challenge in hearing research is to understand how structures known as ‘hair bundles’ are formed in the cochlea. Hair bundles have a crucial role in the detection of sound and the conversion of mechanical signals (that is, sound waves) into electrical signals. The cochlea contains two types of hair cells – inner and outer – and a hair bundle protrudes from the top of every hair cell. Each hair bundle consists of a collection of smaller hair-like structures called stereocilia that line up in rows within the bundle to form a structure that resembles a staircase (Figure 1). The stereocilia are filled with filaments made of the protein actin.

Figure 1: The roles of the two isoforms of myosin 15 (MYO15) in hair bundles.

Left: Schematic depiction showing the three rows of stereocilia in a normal hair bundle, with the first row (dark green) being the shortest and the third row (pale purple) being the tallest. This difference in height results in a characteristic staircase-like structure. The stereocilia in the first two rows mediate the process of mechanotransduction, and the large isoform of myosin 15 localizes to the tips of these stereocilia; the small isoform is found primarily in the taller stereocilia in the third row. Right: When both isoforms are defective or absent, the stereocilia in the third row do not reach their normal height (top). If the N-terminal extension in the large isoform is absent in mice, hair bundles form normally but some of the stereocilia in the first two rows degenerate in older animals (bottom). The large isoform of myosin 15 has a large extension (shown in orange) at its N-terminus.

Through studies of deaf patients, geneticists have made remarkable progress in identifying genes that are required for hearing (see hereditaryhearingloss.org). Many of the corresponding proteins are important for the function of hair cells and more than a dozen of them have roles in the hair bundle; these proteins include several myosin motor proteins that differ from the conventional myosin motors that are found in muscle cells. Hair cells actually produce two versions (or isoforms) of one of these unconventional myosin motors, myosin 15 (Wang et al., 1998; Liang et al., 1999). One of these isoforms has a large (134kD) extension at its N-terminus, but the role played by this extension in hair cells has long been a mystery.

A clue to the importance of the extension is provided by the fact that mutations in the gene (exon 2) that encodes the additional amino acids in the extension cause deafness in humans (Nal et al., 2007). To explore the role of this extension Jonathan Bird and co-workers – including Qing Fang as first author – have compared mice in which the myosin 15 proteins have the extension (isoform 1) and mice in which they do not (isoform 2; Fang et al., 2015).

Previously our knowledge about the function of myosin 15 was based on studies of mice with a mutant shaker2 gene: this mutation leads to defective hair cells in both the cochlea and the vestibular system, which is the part of the ear that controls balance. (The name shaker was coined to describe the unsteady movements seen in these mice). The shaker2 mutation effects both isoforms of myosin 15 and prevents the stereocilia growing beyond a certain height (Probst et al., 1998). The staircase-like structure seen in normal hair bundles is not seen in the shaker2 mice.

Experiments with an antibody that recognizes both isoforms suggest that myosin 15 is located at the tips of the stereocilia (Belyantseva et al., 2003). The shaker2 phenotype suggests that myosin 15 promotes the growth of stereocilia, presumably by working as an actual motor that interacts with actin filaments (Bird et al., 2014). However, the details of how this happens are not fully understood, although it might depend on proteins that are transported to the growing tip by myosin 15 (Belyantseva et al., 2005; Zampini et al., 2011).

The large isoform of myosin 15 (green) localizes predominately at the tips of short stereocilia (magenta), but not tall stererocilia, in inner hair cells in the cochlea of mice

To examine the role played by the large extension in isoform 1, Fang, Bird and colleagues – who are based at the University of Michigan, the National Institute on Deafness and Other Communication Disorders, and the University of Kentucky – generated an antibody that is specific to this isoform and used it to investigate the effects of deleting the exon 2 gene (Fang et al., 2015). Surprisingly, they found that isoform 1 is restricted to the first two rows of stereocilia in inner hair cells (Figure 1). In outer hair cells, on the other hand, isoform 1 is also found at the tall stereocilia in the third row. As for isoform 2, it is mainly present in the third row in inner hair cells.

Finding the two isoforms in different locations came as a surprise, but it could help to explain why deletion of the N-terminus and shaker2 mutations lead to different phenotypes. Shaker2 mutations affect both isoforms and lead to short hair bundles. Deletion of the N-terminus does not affect the length of stereocilia: rather, the hair bundles develop normally at first, but the first two rows of stereocilia then wither away. This suggests that the large isoform is important for the maintenance of a subset of the stereocilia: in particular, it maintains the stereocilia are involved in converting sound energy into an electrical signal in the inner part of the cochlea.

This conversion process, which is called mechanotransduction, is largely present in both the shaker2 mutants and in the mice in which the N-terminus has been deleted, albeit with some subtle differences. This phenotype suggests that myosin 15 is not directly involved in mechanotransduction: however, it seems that the large isoform of myosin 15 can recognize and accumulate at sites where this process takes place. The localization pattern of myosin 15 observed in the outer hair cells reinforces the idea that some form of membrane tension is required for accumulation of the large isoform.

A similar result was found with another protein (called sans) that is required for growth of stereocilia: deleting sans after hair bundles had fully formed caused the first two rows of stereocilia to shrink over time (Caberlotto et al., 2011). Sans interacts with the mechanotransduction machinery in hair cells (Lefèvre et al., 2008), and the loss of sans has a more dramatic effect on mechanotransduction than the loss of myosin 15. Nevertheless, these two cases suggest that it is possible to uncouple the different roles of various proteins in development and in the subsequent maintenance of mechanically-sensitive stereocilia in hair bundles. It will be interesting to see whether other short bundle mutants may have a similar phenotype, if given the chance.

Paper Acknowledgements

We thank Dennis Drayna, Lisa Cunningham, Katie Kindt and Melanie Barzik for critical reading; and Stacey Cole, Elizabeth Wilson, Joe Duda, Karin Halsey, Lisa Kabara, Jennifer Benson, Stephanie Edelmann, Anastasiia Nelina and Ron Petralia for expert technical assistance. This research was supported by funds from the NIDCD intramural research program DC000039-18 and DC000048-18 (JEB, IAB, TBF), NIDCD extramural funds R01 DC05053 (SAC, GIF, QF, MM, and AAI), R01 DC008861 (AAI, GIF), P30 DC05188 (DFD), the Hearing Health Foundation (MM) and a University of Michigan Barbour Scholarship and James V. Neel Fellowship (QF). We thank the University of Michigan Transgenic Animal Model Core and grants that support them (P30 CA46592), and the animal care staff at each institution.

This post originally appeared on eLife Science on October 6, 2015 in reference to the scientific publication, "The 133-kDa N-terminal domain enables myosin 15 to maintain mechanotransducing stereocilia and is essential for hearing." For the article's references and citations, please click here. 

Meet the Researcher: Samira Anderson, Au.D., Ph.D.

By Tine Aakerlund Pollard

Samira Anderson, Au.D., Ph.D.  received her Ph.D. from Northwestern University, and also holds an Au.D. from the University of Florida. Anderson is an assistant professor in the Department of Hearing and Speech Sciences at the University of Maryland and is a 2014 Emerging Research Grant recipient.

My experience as a clinical audiologist inspired my research. I worked for 26 years as an audiologist before deciding to pursue a Ph.D. Part of my motivation came from working with patients who struggled with their hearing aids. I was frustrated that I was unable to predict who would benefit from hearing aids based on the results of audiological evaluations.

Two people who have identical audiograms and who are fit with the same advanced hearing aids may experience vastly different results when hearing in the presence of noise. I wanted to study the way the brain processes sound, and how deficits in this process may impact the accuracy of the auditory signal reaching the brain.

To examine the neural processing of auditory input across the life span, I study the development of speech sound differentiation in infants, and the relationship between speech encoding and later language development. This information may lead to earlier identification and treatment of language-based learning impairments. 

In older adults, I am looking at the effects of aging and hearing loss on the ability to understand speech in complex environments. As we age, we begin to notice a gradual decrease in our ability to process incoming stimuli, in part due to slower speed of processing. These changes are exacerbated by hearing loss and deficits in cognitive abilities, such as memory and attention. 

Specifically in the future, I hope to determine the effects of manipulating hearing aid settings on the ability of the brain to accurately encode speech. Understanding the effects of amplification on the brain’s processing of speech means that better hearing aid processing algorithms can be developed. I would also like to compare changes in the brain’s processing of sound after wearing hearing aids alone vs. wearing hearing aids and using auditory training.

Studying language development made me interested in hearing science. My mother immigrated to the U.S. from Lebanon just before I was born, and I grew up hearing both English and Arabic. This exposure led to an interest in languages and how we first acquire spoken language as children. I was born in Southern California but grew up all over the U.S. as my father was a career Marine.

Both of my parents have hearing loss, so I have witnessed firsthand their struggles with hearing. My mother’s father was an agronomist and had a large farm in Damascus, Syria. When visiting him in Syria I would hear street vendors calling out that they had “Miqdadi cucumbers”—Miqdadi was his last name. I believe that my interest in the scientific field came from him as well as from my mother.

Read Anderson’s first-person account of her switch from the clinic to the lab and details about her research in “A Closer Look,” in the Winter 2014 issue of Hearing Health.

Samira Anderson, Au.D., Ph.D., is a General Grand Chapter Royal Arch Masons International award recipient. Hearing Health Foundation would like to thank the Royal Arch Masons for their generous contributions to Emerging Research Grantees working in the area of central auditory processing disorders (CAPD). We appreciate their ongoing commitment to funding CAPD research.

We need your help supporting innovative hearing and balance science through our Emerging Research Grants program. Please make a contribution today.

Distilling the Data

By Michael Lovett, Ph.D.

The burgeoning field of bioinformatics allows the Hearing Restoration Project to analyze and compare large genomics datasets and identify the best genes for more testing. This sophisticated data analysis will help speed the way toward a cure for hearing loss and tinnitus.

Since its launch in 2011, the Hearing Restoration Project (HRP) is focused on identifying new therapies that will restore inner ear hair cell function, and hence hearing. Within the consortium, smaller research groups engage in separate projects over the course of the year, to move the science along more quickly.

Over the past decade my group, and the group led by my collaborator Mark Warchol, Ph.D., have worked to identify genes that are potential targets for drug development or for gene therapies to cure hearing loss. Our approach has been to determine the exact mechanisms that some vertebrates—in our case, birds—use to regenerate their hair cells and thus spontaneously restore their hearing. We have been comparing this genetic “tool kit” with the mechanisms that mammals normally use to make hair cells.

Unlike birds, mammals cannot regenerate adult hair cells when they are damaged, which is a leading cause of human hearing and balance disorders. Our working hypothesis is that birds have regeneration mechanisms that mammals are missing—or that mammals have developed a repressive mechanism that prevents hair cell regeneration.

In either case, our strategy has been to get a detailed picture of what transpires during hair cell regeneration in birds by using cutting-edge technologies developed during the Human Genome Project (the international research collaboration whose goal was the complete mapping of all the nuclear DNA in humans). These next-generation (NextGen) DNA sequencing methods have allowed us to accurately measure changes in every single gene as chick sensory hair cells regenerate.

The good news is that this gives us, for the first time, an exquisitely detailed and accurate description of all of the genes that are potential players in the process. The bad news is that this is an enormous amount of information; thousands of genes change over the course of seven days of regeneration.

Some of these will be the crucially important—and possibly game-changing—genes that we want to explore in potential therapies, but most will be downstream effects of those upstream formative events. The challenge is to correctly identify the important causative needles in the haystack of later consequences.

We already know some important genetic players, but we are still far from understanding the genetic wiring of hair cell development or regeneration. For example, after decades of basic research, we know that certain signaling pathways, such as those termed Notch and Wnt, are important in specifying how hair cells develop. These chemical signaling pathways are made of multiple protein molecules, each of which is encoded by a single gene.

However, the Notch and Wnt pathways together comprise fewer than 100 genes and, despite being intensively studied for years, we do not completely understand every nuance of how they fit together.

It also may seem surprising that—more than a decade after the completion of the Human Genome Project and projects sequencing mouse, chick, and many other species’ genomic DNA—we still do not know the exact functions of many of the roughly 20,000 genes, mostly shared, that are found in each organism. This is partly because teasing out all of their interactions and biochemical properties is a painstaking process, and some of the genes exert subtly different effects in different organs. It is also because the genetic wiring diagram in different cells is a lot more complicated than a simple set of “on/off” switches.

All of this sounds a bit dire. Fortunately, we do have some tools for filtering the data deluge into groups of genes that are more likely to be top candidates. The first is to extract all of the information on “known” pathways, such as the Notch and Wnt mentioned earlier. That is relatively trivial and can be accomplished by someone reasonably well versed in Microsoft Excel.

That leaves us with the vast “unknown” world. Analyzing this requires computational, mathematical, and statistical methods that are collectively called bioinformatics. This burgeoning field has been in existence for a couple of decades and covers the computational analysis of very large datasets in all its forms. For example, we routinely use well-established bioinformatic methods to assemble and identify all of the gene sequences from our NextGen DNA sequence reads. These tasks would take many years if done by hand, but a matter of hours by computational methods.

In the case of our hair cell regeneration data, our major bioinformatic task is to identify the best genes for further experimental testing. One method is to computationally search the vast biological literature to see if any of them can be connected into new networks or pathways. There are now numerous software tools for conducting these types of searches. However, this really is not very helpful when searching through several thousand genes at once. The data must be filtered another way to be more useful.

We have used statistical pattern matching tools called self-organizing maps to analyze all of our data across every time point of hair cell regeneration. In this way we can detect genes that show similar patterns of changes and then drill down deeper into whether these genes are connected. This has provided us with an interesting “hit list” of genes that have strong supporting evidence of being good candidates for follow-up.

An additional approach is to compare our chick data to other datasets that the HRP consortium is collecting. The logic here is that we expect key genetic components to be shared across species. For example, we now know a great deal about what genes are used in zebrafish hair cell regeneration and the genes that specify mouse hair cells during normal development. We can conduct computational comparisons across these big datasets to identify what is similar and what is different. Again, this has yielded a small and interesting collection of genes that is being experimentally tested. 

Our final strategy has been to extract classes of genes that act as important switches in development. These transcription factors control other genetic circuits. We have identified all of these that change during chick hair cell regeneration. As a consortium the HRP now has a collection of about 200 very good candidate genes for follow-up. However, software and high-speed computation are not going to do it all for us. We still need biologists to ask and answer the important questions and to direct the correct bioinformatics comparisons.

Hair cell regeneration is a plausible goal for the treatment of hearing and balance disorders. The question is not if we will regenerate hair cells in humans, but when. Your financial support will help to ensure we can continue this vital research and find a cure in our lifetime! Please help us accelerate the pace of hearing and balance research and donate today. Your HELP is OUR hope!

If you have any questions about this research or our progress toward a cure for hearing loss and tinnitus, please contact Hearing Health Foundation at info@hhf.org.

Michael Lovett, Ph.D., is a professor at the National Lung & Heart Institute in London and the chair in systems biology at Imperial College London.

Getting a Hearing Test May Be Good for Your Memory

By the Better Hearing Institute

If you want to help your memory and cognitive performance, you may want to get a hearing test and treat hearing loss. In response to a growing body of research that shows a link between unaddressed hearing loss and cognitive function, the Hearing Health Foundation (HHF) and the Better Hearing Institute (BHI) are encouraging people to get their hearing checked by a healthcare professional in recognition of World Alzheimer’s Month in September.

According to Brandeis University Professor of Neuroscience, Dr. Arthur Wingfield, who has been studying cognitive aging and the relationship between memory and hearing acuity for many years, effortful listening due to unaddressed hearing loss is associated with increased stress and poorer performance on memory tests.
 
His research shows that even when people with unaddressed hearing loss perceive the words that are being spoken, their ability to remember the information suffers—likely because of the draw on their cognitive resources that might otherwise be used to store what has been heard in memory. This is especially true for the comprehension of quick, informationally complex speech that is part of everyday life.
 
“Even if you have just a mild hearing loss that is not being treated, cognitive load increases significantly,” Wingfield said. “You have to put in so much effort just to perceive and understand what is being said that you divert resources away from storing what you have heard into your memory.”
 
How hearing loss affects cognitive function
Our ears and auditory system bring sound to the brain. But we actually “hear” with our brain, not with our ears.
 
According to Wingfield, unaddressed hearing loss not only affects the listener’s ability to perceive the sound accurately, but it also affects higher-level cognitive function. Specifically, it interferes with the listener’s ability to accurately process the auditory information and make sense of it.
 
In one study, Wingfield and his co-investigators found that older adults with mild to moderate hearing loss performed poorer on cognitive tests of memory than those of the same age who had good hearing.
 
In another study, Wingfield and colleagues at the University of Pennsylvania and Washington University in St. Louis used MRI to look at the effect that hearing loss has on both brain activity and structure. The study found that people with poorer hearing had less gray matter in the auditory cortex, a region of the brain that is necessary to support speech comprehension.
 
Wingfield has suggested the possibility that the participant’s hearing loss had a causal role. He and his co-investigators hypothesize that when the sensory stimulation is reduced due to hearing loss, corresponding areas of the brain reorganize their activity as a result.
 
“The sharpness of an individual’s hearing has cascading consequences for various aspects of cognitive function,” said Wingfield. “We’re only just beginning to understand how far-reaching these consequences are.”
 
As people move through middle age and their later years, Wingfield suggested, it is reasonable for them to get their hearing tested annually. If there is a hearing loss, it is best to take it seriously and treat it.
 
Hearing loss and dementia

A number of studies have come to light over the last few years showing a link between hearing loss and dementia.  Specifically, a pair of studies out of Johns Hopkins found that hearing loss is associated with accelerated cognitive decline in older adults and that seniors with hearing loss are significantly more likely to develop dementia over time than those who retain their hearing. 
 
A third Johns Hopkins study revealed a link between hearing loss and accelerated brain tissue loss. The researchers found that for older adults with hearing loss, brain tissue loss happens faster than it does for those with normal hearing.
 
Some experts believe that interventions, like hearing aids, could potentially delay or prevent dementia. Research is ongoing. 
 
Staying connected

A number of studies indicate that maintaining strong social connections and keeping mentally active as we age might lower the risk of cognitive decline and Alzheimer's disease, according to the Alzheimer’s Association website.
 
Interestingly, BHI research shows that people with hearing difficulty who use hearing aids are more likely to have a strong support network of family and friends, feel engaged in life, and meet up with friends to socialize. They even say that using hearing aids has a positive effect on their relationships.

For more information about hearing health and finding a healthcare professional, please visit: http://hearinghealthfoundation.org/find-a-hearing-health-professional.

The content for this blog post originated in a press release issued by The Better Hearing Institute on September 8, 2015.