Detection of Transcriptome Changes in Single Cells After Aminoglycoside-Induced Hair Cell Loss in the Chicken Basilar Papilla
Birds regenerate cochlear hair cells by activating dormant supporting cells. This project builds on innovative methods and findings to study how supporting cells are activated when ototoxic drugs cause hair cell death. The project uses single cell analysis (during which we study the complement of genes that are active in many individual cells) to identify triggers that initiate, execute, sustain, and ultimately terminate the regenerative process. Using bioinformatics methods to process the resulting data, we will focus this year on the analysis of the chicken cochlea cell populations isolated at various time points during hair cell regeneration, which will reveal the molecular steps that occur during hair cell regeneration. We have already identified a first candidate gene signaling pathway that may regulate the regenerative process in the chicken cochlea, and we will be confirming that this pathway plays a role in hair cell regeneration. Interestingly, this pathway is not active during inner ear development, which sets it apart from other pathways linked to chicken (and zebrafish) hair cell regeneration; the other pathways are involved in cell development and may not represent a unique regenerative trigger. Finding triggers that specifically control regeneration may be an important stepping stone on the path to developing cures for hair cell loss in mice and, eventually, humans.